Get regulatory regions: Nott2019

Get epigenomic peak ranges from Nott2019.

NOTT2019_get_regulatory_regions(
  as_granges = FALSE,
  nThread = 1,
  verbose = TRUE
)

Source

Nott et al. (2019)

Arguments

as_granges

Return results a GRanges object instead of a data.table.

nThread

Number of threads to parallelize across.

verbose

Print messages.

See also

Other NOTT2019: NOTT2019_bigwig_metadata, NOTT2019_epigenomic_histograms(), NOTT2019_get_epigenomic_peaks(), NOTT2019_get_interactions(), NOTT2019_get_interactome(), NOTT2019_get_promoter_celltypes(), NOTT2019_get_promoter_interactome_data(), NOTT2019_plac_seq_plot(), NOTT2019_superenhancers(), get_NOTT2019_interactome(), get_NOTT2019_superenhancer_interactome()

Examples

regions <- NOTT2019_get_regulatory_regions()
#> ++ NOTT2019:: Getting regulatory regions data.
#> Importing Astrocyte enhancers ...
#> Importing Astrocyte promoters ...
#> Importing Neuronal enhancers ...
#> Importing Neuronal promoters ...
#> Importing Oligo enhancers ...
#> Importing Oligo promoters ...
#> Importing Microglia enhancers ...
#> Importing Microglia promoters ...