Get regulatory regions: Nott2019

Get epigenomic peak ranges from Nott2019.

Usage

NOTT2019_get_regulatory_regions(
  as_granges = FALSE,
  nThread = 1,
  verbose = TRUE
)

Source

Nott et al. (2019) (doi:10.1126/science.aay0793 )

Arguments

as_granges

Return results a GRanges object instead of a data.table.

nThread

Number of threads to parallelize across.

verbose

Print messages.

See also

Other NOTT2019: NOTT2019_bigwig_metadata, NOTT2019_epigenomic_histograms(), NOTT2019_get_epigenomic_peaks(), NOTT2019_get_interactions(), NOTT2019_get_interactome(), NOTT2019_get_promoter_celltypes(), NOTT2019_get_promoter_interactome_data(), NOTT2019_plac_seq_plot(), NOTT2019_superenhancers(), get_NOTT2019_interactome(), get_NOTT2019_superenhancer_interactome()

Examples

if (FALSE) { # \dontrun{
regions <- NOTT2019_get_regulatory_regions()
} # }