Get cell type-specific promoter/emhancer/interactome data

Brain cell-specific epigenomic data from Nott et al. (2019).

NOTT2019_get_promoter_interactome_data(dat = NULL)

Source

Nott et al. (2019) (doi:10.1126/science.aay0793 )

Arguments

dat

data.table of genomic coordinates to query with. Set as NULL to return genome-wide data.

See also

Other NOTT2019: NOTT2019_bigwig_metadata, NOTT2019_epigenomic_histograms(), NOTT2019_get_epigenomic_peaks(), NOTT2019_get_interactions(), NOTT2019_get_interactome(), NOTT2019_get_promoter_celltypes(), NOTT2019_get_regulatory_regions(), NOTT2019_plac_seq_plot(), NOTT2019_superenhancers(), get_NOTT2019_interactome(), get_NOTT2019_superenhancer_interactome()

Examples

if (FALSE) { # \dontrun{
dat <- echodata::BST1
annot_sub <- NOTT2019_get_promoter_interactome_data(dat=dat)
} # }