Process GoShifter output files — GOSHIFTER_process_results • echoannot

Read the .locusscore and .enrich output files written by GoShifter and merge them with ROADMAP reference metadata.

GOSHIFTER_process_results(locus_dir, output_bed, out_prefix)

Arguments

locus_dir: Path to the locus-level results directory.
output_bed: Path to the annotation BED file that was tested.
out_prefix: Prefix used when writing GoShifter output files (typically the annotation name).

Value

A data.table with per-locus scores, p-values, and ROADMAP metadata.

See also

Other GOSHIFTER: GOSHIFTER(), GOSHIFTER_bed_names(), GOSHIFTER_check_overlap(), GOSHIFTER_create_LD(), GOSHIFTER_create_snpmap(), GOSHIFTER_find_folder(), GOSHIFTER_get_roadmap_annotations(), GOSHIFTER_heatmap(), GOSHIFTER_histograms_SNPgroups(), GOSHIFTER_histograms_pvals(), GOSHIFTER_list_chromatin_states(), GOSHIFTER_run(), GOSHIFTER_search_ROADMAP(), GOSHIFTER_summarise_results()