GoShifter enrichment heatmap — GOSHIFTER_heatmap • echoannot

Create an interactive heatmap of GoShifter enrichment results for significant tests (p <= 0.05), using heatmaply.

GOSHIFTER_heatmap(GS_groups, show_plot = TRUE)

Arguments

GS_groups: A data.table of GoShifter results containing columns pval, Epigenome.name, chromatin_state, SNP_group, and mean_enrichment.
show_plot: If TRUE, print the heatmap (default TRUE).

Value

A heatmaply heatmap object.

See also

Other GOSHIFTER: GOSHIFTER(), GOSHIFTER_bed_names(), GOSHIFTER_check_overlap(), GOSHIFTER_create_LD(), GOSHIFTER_create_snpmap(), GOSHIFTER_find_folder(), GOSHIFTER_get_roadmap_annotations(), GOSHIFTER_histograms_SNPgroups(), GOSHIFTER_histograms_pvals(), GOSHIFTER_list_chromatin_states(), GOSHIFTER_process_results(), GOSHIFTER_run(), GOSHIFTER_search_ROADMAP(), GOSHIFTER_summarise_results()

Examples

if (FALSE) { # \dontrun{
GS_groups <- data.table::data.table(
    pval = c(0.01, 0.03, 0.8),
    Epigenome.name = c("A", "B", "C"),
    chromatin_state = "TssA",
    SNP_group = "group1",
    mean_enrichment = c(0.5, 0.3, 0.1)
)
GOSHIFTER_heatmap(GS_groups)
} # }