GoShifter p-value histograms

Plot histograms of GoShifter p-values for each annotation source. Two p-value columns are shown side-by-side: the manually computed pval and the GoShifter-reported GS_pval.

GOSHIFTER_histograms_pvals(GS_results)

Arguments

GS_results

A data.table of GoShifter results containing columns Annotation, pval, and GS_pval.

Value

A ggplot object (also printed).

See also

Other GOSHIFTER: GOSHIFTER(), GOSHIFTER_bed_names(), GOSHIFTER_check_overlap(), GOSHIFTER_create_LD(), GOSHIFTER_create_snpmap(), GOSHIFTER_find_folder(), GOSHIFTER_get_roadmap_annotations(), GOSHIFTER_heatmap(), GOSHIFTER_histograms_SNPgroups(), GOSHIFTER_list_chromatin_states(), GOSHIFTER_process_results(), GOSHIFTER_run(), GOSHIFTER_search_ROADMAP(), GOSHIFTER_summarise_results()

Examples

if (FALSE) { # \dontrun{
GS_results <- data.table::data.table(
    Annotation = rep("E001", 10),
    pval = runif(10),
    GS_pval = runif(10)
)
GOSHIFTER_histograms_pvals(GS_results)
} # }