Generate ROADMAP BED file names

Construct the file names for ROADMAP chromHMM BED files based on Epigenome IDs in the reference table.

GOSHIFTER_bed_names(RM_ref, suffix = "_15_coreMarks_mnemonics.bed.gz")

Arguments

RM_ref

A data.table of ROADMAP reference entries (must include an EID column).

suffix

File name suffix (default "_15_coreMarks_mnemonics.bed.gz").

Value

A character vector of BED file names.

See also

Other GOSHIFTER: GOSHIFTER(), GOSHIFTER_check_overlap(), GOSHIFTER_create_LD(), GOSHIFTER_create_snpmap(), GOSHIFTER_find_folder(), GOSHIFTER_get_roadmap_annotations(), GOSHIFTER_heatmap(), GOSHIFTER_histograms_SNPgroups(), GOSHIFTER_histograms_pvals(), GOSHIFTER_list_chromatin_states(), GOSHIFTER_process_results(), GOSHIFTER_run(), GOSHIFTER_search_ROADMAP(), GOSHIFTER_summarise_results()