Plot summary of coloc tests

Source: R/coloc.R

Plots the output from catalogueR::run_coloc.

plot_coloc_summary(
  coloc_QTLs,
  PP_thresh = 0.8,
  label_snp_groups = F,
  save_dir = ".",
  show_plot = T
)

See also

Other coloc: COLOC.report_summary(), coloc_QTLs_full, coloc_QTLs, gather_colocalized_data(), get_colocs(), retrieve_sumstats_info(), run_coloc()

Examples

data("coloc_QTLs")
gg_coloc <- plot_coloc_summary(coloc_QTLs=coloc_QTLs, PP_thresh=.99, label_snp_groups=F)

#> Error in plot_coloc_summary(coloc_QTLs = coloc_QTLs, PP_thresh = 0.99,     label_snp_groups = F): 
#> 
#> ** No coloc tests reached the PPH4 threshold (0.99).Try lowering `PP_thresh`. **