Example colocalization results — coloc_QTLs_full • catalogueR

Example colocalization results from running catalogueR::run_coloc on GWAS summary stats from all loci in Nalls23andMe_2019.

coloc_QTLs_full

Format

An object of class data.table (inherits from data.frame) with 155577 rows and 21 columns.

See also

Other coloc: COLOC.report_summary(), coloc_QTLs, gather_colocalized_data(), get_colocs(), plot_coloc_summary(), retrieve_sumstats_info(), run_coloc()

Examples

if (FALSE) {
library(dplyr)
root_dir <- "~/Desktop/Fine_Mapping/Data/GWAS/Nalls23andMe_2019"
sub_dir <- "_genome_wide/COLOC/coloc.eQTL_Catalogue_ALL.csv.gz"
coloc_QTLs_full <- data.table::fread(file.path(root_dir, sub_dir))
coloc_QTLs_full <- coloc_QTLs_full %>% dplyr::rename(gene.QTL=eGene, qtl_id=qtl.id)
usethis::use_data(coloc_QTLs_full, overwrite=T)
}