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Changelog

Source: NEWS.md

echoplot 1.0.0

Bug fixes

  • Migrate all ggplot2::aes_string() calls to ggplot2::aes(.data[[]]) for ggplot2 >= 3.5.0 compatibility.
  • Fix remote URL from bschilder/echoplot to RajLabMSSM/echoplot in DESCRIPTION.
  • Update R requirement from >= 4.0.0 to >= 4.1.
  • Fix Rd formatting and \dontrun{} example guards.
  • Add Rplots.pdf and *.tbi to .gitignore.

echoplot 0.99.9

Bug fixes

  • Local R CMD check fixes and compatibility updates.

echoplot 0.99.8

New features

  • Standardize rworkflows.yml with canonical template: enable Docker on ghcr.io, set write-all permissions.
  • Update R requirement from >= 4.0.0 to >= 4.1.
  • Fix remote URL from bschilder/echoplot to RajLabMSSM/echoplot.

echoplot 0.99.7

Bug fixes

  • construct_snp_labels:
    • Ensure data gets melted first.

echoplot 0.99.6

New features

  • Implement rworkflows
  • New exports:
    • get_palettes
    • list_namespace
  • plot_locus:
    • pass up subset_labels arg.

Bug fixes

  • Make pals an Import, and remove RColorBrewer.
  • Fix Can't combine ..1$Method <factor<2f980>> and ..4$Method <ordered<4e1b3>>. error.
  • Get rid of ggrepel: 7 unlabeled data points (too many overlaps). Consider increasing max.overlaps warnings.
  • Fixed potential issue with getting top SNPs per Method in construct_snp_labels.
  • Fixed colours encodes as numbers must be positive errors.
  • Fix dot_summary_plot after construct_snp_labels updates.

echoplot 0.99.5

New features

  • plot_locus_multi: New function to plot multi-GWAS/multi-ancestry results.
  • get_transcripts_biotypes: New exported function to help users determine available biotypes.
  • get_transcripts: new argument tx_biotypes= allows user to filter by biotypes. Passes up to plot_locus.
  • plot_locus: changed qtl_prefixes –> qtl_suffixes to be consistent with merge naming strategy.
  • Export snp_track_merged.
  • Move functions from echoplot:
    • ROADMAP_plot and plotting subfunctions.
    • XGR_plot and plotting subfunctions.

Bug fixes

  • transcript_model_track: Handle when 0 transcripts are returned, without error.
  • get_transcripts_biotypes ==> get_tx_biotypes in all places.
  • Document all functions.
  • Fix GHA: @master –> @v2

echoplot 0.99.4

New features

  • Replace “PLOT::” with “echoplot::”
  • Add Issues templates.

echoplot 0.99.3

Bug fixes

  • Fix slice_max bug in transcript_model_track.

echoplot 0.99.2

Bug fixes

  • Removed echotabix as dep since these functions are now handled by echoannot.
  • Updated GHA workflow.
  • Nott2019 tracks working again.

echoplot 0.99.0

  • Added a NEWS.md file to track changes to the package.