echodata: Getting Started


Author: Brian M. Schilder


Most recent update: Mar-15-2026

Source: vignettes/echodata.Rmd

Example full SS

Example full GWAS summary statistics.

Nalls 2019

Parkinson’s Disease GWAS from Nalls et al., 2019.

fullSS_Nalls2019 <- echodata::example_fullSS(dataset = "Nalls2019")
## Writing file to ==> /tmp/RtmpseiwyI/nalls2019.fullSS_subset.tsv

Kunkle 2019

Alzheimer’s Disease GWAS from Kunkle et al., 2019.

fullSS_Kunkle2019 <- echodata::example_fullSS(dataset = "Kunkle2019")
## Writing file to ==> /tmp/RtmpseiwyI/kunkle2019.fullSS_subset.tsv

Session Info 

utils::sessionInfo()
## R Under development (unstable) (2026-03-12 r89607)
## Platform: x86_64-pc-linux-gnu
## Running under: Ubuntu 24.04.4 LTS
## 
## Matrix products: default
## BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 
## LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so;  LAPACK version 3.12.0
## 
## locale:
##  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
##  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
##  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
##  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
## 
## time zone: UTC
## tzcode source: system (glibc)
## 
## attached base packages:
## [1] stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
## [1] echodata_1.0.0   BiocStyle_2.39.0
## 
## loaded via a namespace (and not attached):
##  [1] jsonlite_2.0.0      dplyr_1.2.0         compiler_4.6.0     
##  [4] BiocManager_1.30.27 piggyback_0.1.5     zip_2.3.3          
##  [7] Rcpp_1.1.1          tidyselect_1.2.1    parallel_4.6.0     
## [10] tidyr_1.3.2         jquerylib_0.1.4     systemfonts_1.3.2  
## [13] textshaping_1.0.5   yaml_2.3.12         fastmap_1.2.0      
## [16] readr_2.2.0         R6_2.6.1            generics_0.1.4     
## [19] openxlsx_4.2.8.1    knitr_1.51          htmlwidgets_1.6.4  
## [22] tibble_3.3.1        bookdown_0.46       desc_1.4.3         
## [25] tzdb_0.5.0          bslib_0.10.0        pillar_1.11.1      
## [28] R.utils_2.13.0      rlang_1.1.7         DT_0.34.0          
## [31] stringi_1.8.7       cachem_1.1.0        xfun_0.56          
## [34] fs_1.6.7            sass_0.4.10         otel_0.2.0         
## [37] memoise_2.0.1       cli_3.6.5           pkgdown_2.2.0      
## [40] magrittr_2.0.4      digest_0.6.39       hms_1.1.4          
## [43] lifecycle_1.0.5     R.methodsS3_1.8.2   R.oo_1.27.1        
## [46] vctrs_0.7.1         evaluate_1.0.5      glue_1.8.0         
## [49] data.table_1.18.2.1 ragg_1.5.1          purrr_1.2.1        
## [52] rmarkdown_2.30      tools_4.6.0         pkgconfig_2.0.3    
## [55] htmltools_0.5.9