Store fullSS_dat — example_fullSS • echodata

Save downsampled genome-wide summary statistics from different GWAS to disk.

example_fullSS(
  save_dir = tempdir(),
  dataset = c("Nalls2019", "Kunkle2019"),
  nThread = 1,
  verbose = TRUE
)

Arguments

save_dir: Path to save the example summary statistics to. It is usually best to provide the absolute path rather than the relative path.
dataset: Name of the example GWAS dataset to use.
nThread: Number of threads to use.
verbose: Print messages.

Value

Path to saved summary statistics file.

Details

"Nalls2019"Parkinson's Disease GWAS from Nalls et al. 2019 (excluding 23andMe data).
"Kunkle2019"Alzheimer's Disease GWAS from Kunkle et al. 2019.

Examples

fullSS_path <- example_fullSS()
#> Writing file to ==> /tmp/RtmpLQCV4M/nalls2019.fullSS_subset.tsv