Store fullSS_dat — example_fullSS • echodata

Save downsampled genome-wide summary statistics from different GWAS to disk.

Usage

example_fullSS(
  save_dir = tempdir(),
  dataset = c("Nalls2019", "Kunkle2019"),
  nThread = 1,
  verbose = TRUE
)

Arguments

save_dir: Path to save the example summary statistics to. It is usually best to provide the absolute path rather than the relative path.
dataset: Name of the example GWAS dataset to use.
nThread: Number of threads to use.
verbose: Print messages.

Value

Path to saved summary statistics file.

Details

Nalls2019: Parkinson's Disease GWAS from Nalls et al. 2019 (doi:10.1016/S1474-4422(19)30320-5 ), excluding 23andMe data.
Kunkle2019: Alzheimer's Disease GWAS from Kunkle et al. 2019 (doi:10.1038/s41588-019-0358-2 ).

Examples

fullSS_path <- example_fullSS()
#> Writing file to ==> /tmp/RtmpIRVypB/nalls2019.fullSS_subset.tsv