echodata: Getting Started

Author: Brian M. Schilder

Most recent update: Mar-16-2026

library(echodata)
has_internet <- curl::has_internet()

Example full SS

Example full GWAS summary statistics.

Nalls 2019

Parkinson’s Disease GWAS from Nalls et al., 2019.

fullSS_Nalls2019 <- echodata::example_fullSS(dataset = "Nalls2019")

## Writing file to ==> /tmp/RtmpK6ipbh/nalls2019.fullSS_subset.tsv

Kunkle 2019

Alzheimer’s Disease GWAS from Kunkle et al., 2019.

fullSS_Kunkle2019 <- echodata::example_fullSS(dataset = "Kunkle2019")

## Writing file to ==> /tmp/RtmpK6ipbh/kunkle2019.fullSS_subset.tsv

Session Info

utils::sessionInfo()

## R Under development (unstable) (2026-03-12 r89607)
## Platform: x86_64-pc-linux-gnu
## Running under: Ubuntu 24.04.4 LTS
## 
## Matrix products: default
## BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 
## LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so;  LAPACK version 3.12.0
## 
## locale:
##  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
##  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
##  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
##  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
## 
## time zone: UTC
## tzcode source: system (glibc)
## 
## attached base packages:
## [1] stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
## [1] echodata_1.0.0   BiocStyle_2.39.0
## 
## loaded via a namespace (and not attached):
##  [1] sass_0.4.10         generics_0.1.4      tidyr_1.3.2        
##  [4] stringi_1.8.7       hms_1.1.4           digest_0.6.39      
##  [7] magrittr_2.0.4      evaluate_1.0.5      bookdown_0.46      
## [10] fastmap_1.2.0       R.oo_1.27.1         jsonlite_2.0.0     
## [13] R.utils_2.13.0      zip_2.3.3           BiocManager_1.30.27
## [16] purrr_1.2.1         textshaping_1.0.5   jquerylib_0.1.4    
## [19] cli_3.6.5           rlang_1.1.7         R.methodsS3_1.8.2  
## [22] cachem_1.1.0        yaml_2.3.12         otel_0.2.0         
## [25] tools_4.6.0         parallel_4.6.0      tzdb_0.5.0         
## [28] memoise_2.0.1       dplyr_1.2.0         DT_0.34.0          
## [31] curl_7.0.0          vctrs_0.7.1         R6_2.6.1           
## [34] lifecycle_1.0.5     fs_1.6.7            htmlwidgets_1.6.4  
## [37] ragg_1.5.1          pkgconfig_2.0.3     desc_1.4.3         
## [40] pkgdown_2.2.0       pillar_1.11.1       bslib_0.10.0       
## [43] openxlsx_4.2.8.1    data.table_1.18.2.1 glue_1.8.0         
## [46] Rcpp_1.1.1          systemfonts_1.3.2   xfun_0.56          
## [49] tibble_3.3.1        tidyselect_1.2.1    knitr_1.51         
## [52] htmltools_0.5.9     rmarkdown_2.30      piggyback_0.1.5    
## [55] readr_2.2.0         compiler_4.6.0