Annotate any missense variants — annotate_missense • echoannot

Annotate any missense variants with getBM.

annotate_missense(merged_DT, snp_filter = "Support>0")

Arguments

merged_DT: Merged fine-mapping results data from finemap_loci.
snp_filter: Row-wise filter to apply to merged_DT filter (provided as a string).

See also

Other annotate: biomart_snp_info(), biomart_snps_to_geneInfo(), haplor_epigenetics_enrichment(), haplor_epigenetics_summary(), haplor_haploreg(), haplor_regulomedb(), plot_missense(), snps_by_mutation_type()

Examples

if (FALSE) {
merged_DT <- echodata::get_Nalls2019_merged()
annotated_DT <- annotate_missense(merged_DT = merged_DT)
}