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Annotate any missense variants

Source: R/annotate_missense.R
annotate_missense.Rd

Annotate any missense variants with getBM.

Usage

annotate_missense(merged_DT, snp_filter = "Support>0")

Arguments

merged_DT

Merged fine-mapping results data from echolocatoR::finemap_loci.

snp_filter

Row-wise filter to apply to merged_DT filter (provided as a string).

See also

Other annotate: biomart_snp_info(), biomart_snps_to_geneInfo(), haplor_epigenetics_enrichment(), haplor_epigenetics_summary(), haplor_haploreg(), haplor_regulomedb(), plot_missense(), snps_by_mutation_type()

Examples

if (FALSE) { # \dontrun{
merged_DT <- echodata::get_Nalls2019_merged()
annotated_DT <- annotate_missense(merged_DT = merged_DT)
} # }