Query Roadmap API — ROADMAP_tabix • echoannot

Query Roadmap epigenomic annotations (chromatin marks) using a range of genomic coordinates.

Usage

ROADMAP_tabix(
  eid,
  query_dat,
  save_dir = tempdir(),
  force_new = FALSE,
  conda_env = "echoR_mini",
  nThread = 1,
  verbose = TRUE
)

Source

query_dat <- echodata::BST1 dat <- ROADMAP_tabix( query_dat = query_dat, eid = "E099")

Arguments

eid: Roadmap annotation ID
query_dat: Variant-level summary statistics.
save_dir: Directory to store query results in.
force_new: Overwrite any existing files of the same name.
verbose: Print messages.

Details

ROADMAP file locations.

See also

Other ROADMAP: ROADMAP_construct_reference(), ROADMAP_merge_and_process(), ROADMAP_query()