Query Roadmap API

Source: R/ROADMAP_tabix.R

Query Roadmap epigenomic annotations (chromatin marks) using a range of genomic coordinates.

ROADMAP_tabix(
  eid,
  query_dat,
  save_dir = tempdir(),
  force_new = FALSE,
  conda_env = "echoR_mini",
  nThread = 1,
  verbose = TRUE
)

Source

query_dat <- echodata::BST1 dat <- ROADMAP_tabix( query_dat = query_dat, eid = "E099")

Arguments

eid

Roadmap annotation ID

query_dat

Variant-level summary statistics.

save_dir

Directory to store query results in.

force_new

Overwrite any existing files of the same name.

verbose

Print messages.

as_granges

Whether to return query as a data.frame or GRanges.