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Standardize Roadmap query

Source: R/ROADMAP_merge_and_process.R
ROADMAP_merge_and_process.Rd

Standardize and filter Roadmap query results.

Usage

ROADMAP_merge_and_process(
  grl.roadmap,
  gr.snp,
  n_top = NULL,
  minoverlap = 1,
  verbose = TRUE
)

Arguments

grl.roadmap

Roadmap query results.

n_top

The number of top annotation sources (e.g. tissues) to include, sorted by greatest number of rows (i.e. the number of genomic ranges within the window).

minoverlap

A single non-negative integer.

Only ranges with a minimum of minoverlap overlapping positions are considered to be overlapping.

When type is "any", at least one of maxgap and minoverlap must be set to its default value.

verbose

Print messages.

See also

Other ROADMAP: ROADMAP_construct_reference(), ROADMAP_query(), ROADMAP_tabix()