Get overlap between data table of SNPs and HiChIP_FitHiChIP coaccessibility anchors

Anchors are the genomic regions that have evidence of being functionally connected to one another (coaccessible), e.g. enhancer-promoter interactions.

CORCES2020_get_hichip_fithichip_overlap(query_dat, verbose = TRUE)

Source

https://doi.org/10.1038/s41588-020-00721-x

Arguments

query_dat

Fine-mapping results.

verbose

Print messages.

See also

Other CORCES2020: CORCES2020_get_ATAC_peak_overlap(), CORCES2020_prepare_bulkATAC_peak_overlap(), CORCES2020_prepare_scATAC_peak_overlap(), get_CORCES2020_bulkATACseq_peaks(), get_CORCES2020_cicero_coaccessibility(), get_CORCES2020_hichip_fithichip_loop_calls(), get_CORCES2020_scATACseq_celltype_peaks(), get_CORCES2020_scATACseq_peaks()