Package index

Fine-mapping methods

Individual statistical fine-mapping method wrappers

ABF()

Fine-map with ABF

SUSIE()

Fine-map with SUSIE

FINEMAP()

Fine-map locus with FINEMAP

PAINTOR()

PAINTOR: fine-map

POLYFUN()

Run PolyFun+SUSIE fine-mapping pipeline

COJO()

Run GCTA-COJO

Pipeline

Run one or more fine-mapping methods in a unified pipeline

multifinemap()

Multi-fine-map

lfm()

List fine-mapping methods

PolyFun utilities

Helper functions for PolyFun installation and prior computation

POLYFUN_compute_priors()

PolyFun: recompute priors

POLYFUN_help()

POLYFUN help

POLYFUN_install()

Install PolyFun

Data utilities

Column checks, cleanup, and path management

drop_finemap_cols()

Drop fine-mapping columns

check_required_cols()

Check for necessary columns

required_cols()

Table of required columns

create_method_path()

Create method path