Create method path — create_method_path • echofinemap

Create a fine-mapping method-specific path.

Usage

create_method_path(
  locus_dir,
  finemap_method,
  include_astrices = FALSE,
  LD_reference = NULL,
  compress = FALSE
)

Arguments

locus_dir: Locus-specific directory to store results in.
finemap_method: Fine-mapping method to run. See lfm for a list of all fine-mapping methods currently available.
include_astrices: Whether to keep any astrices in file path.
LD_reference: Name of the LD reference panel.
compress: Whether to add ".gz" at the end of the file path.

See also

Other finemapping functions: multifinemap(), multifinemap_handler(), multifinemap_handler_method()

Examples

if (FALSE) { # \dontrun{
locus_dir <- echodata::locus_dir
path <- echofinemap::create_method_path(locus_dir = locus_dir, 
                                        finemap_method = "SUSIE")
} # }