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Find and import PolyFun annotation files

Source: R/POLYFUN_gather_annotations.R
POLYFUN_gather_annotations.Rd

Find and import PolyFun annotation files

Usage

POLYFUN_gather_annotations(
  chromosomes = seq_len(22),
  subset_snps = NULL,
  polyfun_annots
)

See also

Other polyfun: POLYFUN(), POLYFUN_compute_priors(), POLYFUN_download_ref_files(), POLYFUN_find_folder(), POLYFUN_finemapper(), POLYFUN_gather_ldscores(), POLYFUN_help(), POLYFUN_import_priors(), POLYFUN_initialize(), POLYFUN_munge_summ_stats(), POLYFUN_prepare_snp_input(), POLYFUN_run_ldsc()

Examples

if (FALSE) { # \dontrun{
dat <- echodata::BST1
annot_DT <- POLYFUN_gather_annotations(
    chromosomes = dat$CHR[1],
    subset_snps = subset_snps,
    polyfun_annots = file.path(
        "/pd-omics/tools/polyfun",
        "annotations/baselineLF2.2.UKB"
    )
)
} # }