Download reference files

Download 1000 Genomes reference files.

Usage

POLYFUN_download_ref_files(
  alkes_url = paste("https://data.broadinstitute.org/alkesgroup",
    "LDSCORE/1000G_Phase1_plinkfiles.tgz", sep = "/"),
  output_dir = tools::R_user_dir(package = "echofinemap", which = "cache"),
  force_overwrite = FALSE,
  return_prefix = TRUE,
  download_method = "axel",
  conda_env = "echoR_mini",
  verbose = TRUE
)

Source

ref_prefix <- POLYFUN_download_ref_files()

Value

File prefix.

See also

Other polyfun: POLYFUN(), POLYFUN_compute_priors(), POLYFUN_find_folder(), POLYFUN_finemapper(), POLYFUN_gather_annotations(), POLYFUN_gather_ldscores(), POLYFUN_help(), POLYFUN_import_priors(), POLYFUN_initialize(), POLYFUN_munge_summ_stats(), POLYFUN_prepare_snp_input(), POLYFUN_run_ldsc()