Reassign lead SNPs — reassign_lead_snps • echodata

Reassign lead SNPs per group.

Usage

reassign_lead_snps(
  merged_dat,
  SNP = "SNP",
  P = "P",
  Effect = "Effect",
  grouping_vars = c("Dataset", "Locus"),
  nThread = 1,
  verbose = TRUE
)

Arguments

merged_dat: Merged, multi-locus fine-mapping results data.
SNP: Name of the SNP column.
P: Name of the p-value column.
Effect: Name of the Effect column.
grouping_vars: Column names to group by when assigning lead SNPs.
nThread: Number of threads to parallelise across.
verbose: Print messages.

Examples

 
merged_dat <- get_Nalls2019_merged()
merged_dat2 <- reassign_lead_snps(merged_dat = merged_dat)
#> Reassigning lead SNPs by: Dataset, Locus