echolocatoR output example: select loci

An example results file after running finemap_loci on 3 Parkinson's disease (PD)-associated loci (BST1, LRRK2, and MEX3C).

Data originally comes from the PD GWAS by Nalls et al. (The Lancet Neurology).

get_Nalls2019_loci(
  save_dir = tempdir(),
  return_paths = TRUE,
  return_dir = FALSE,
  limit_snps = NULL,
  force_new = FALSE,
  verbose = TRUE
)

Arguments

save_dir

Local directory to cache data in.

return_paths

Returns local paths to cached fine-mapping results (default: TRUE), or the data itself as a named list (FALSE).

return_dir

Return the directory name instead of the individual file paths.

limit_snps

Limit the number of SNPs saved in each file.

force_new

Force the creation of new files even if old ones exists.

verbose

Print messages.

Value

File paths

Examples

files <- get_Nalls2019_loci()
#> Writing fine-mapped locus data ==> /tmp/RtmpLQCV4M/Nalls23andMe_2019/BST1.multi_finemap.csv.gz
#> Writing fine-mapped locus data ==> /tmp/RtmpLQCV4M/Nalls23andMe_2019/LRRK2.multi_finemap.csv.gz
#> Writing fine-mapped locus data ==> /tmp/RtmpLQCV4M/Nalls23andMe_2019/MEX3C.multi_finemap.csv.gz