Extract loci from GWAS/QTL summary statistics

Source: R/extract_loci.R

Extract loci from GWAS/QTL summary statistics

extract_loci(topSNPs, fullSS, bp_distance = 5e+05, munged = TRUE)

Arguments

topSNPs

Positions of the top SNPs prepare using import_topSNPs.

fullSS

data.table of the full GWAS/QTL summary statistics.

bp_distance

The basepair distance upstream/downstream of the proxy SNP (in topSNPs) to extract.

munged

Whether fullSS was previously munged with format_sumstats.