Convert data.table/data.frame to a GRanges object.
Usage
dt_to_granges(
dat,
chrom_col = "CHR",
start_col = "POS",
end_col = start_col,
style = "NCBI",
verbose = TRUE
)Arguments
- dat
Data.
- chrom_col
Chromosome column name.
- start_col
Genomic start position column name.
- end_col
Genomic end position column name.
- style
GRanges style (e.g. "NCBI, "UCSC") set by seqlevelsStyle.
- verbose
Print messages.
Examples
gr <- echodata::dt_to_granges(dat = echodata::BST1)
#> Converting dat to GRanges object.