echolocatoR output example: LRRK2 locus

An example results file after running finemap_loci.

data("LRRK2")

Format

data.table

SNP

SNP RSID

CHR

Chromosome

POS

Genomic position (in basepairs)

...

Optional: extra columns

Source

https://doi.org/10.1016/S1474-4422(19)30320-5

Details

Data originally comes from the Parkinson's disease GWAS by Nalls et al. (The Lancet Neurology).

Examples

if (FALSE) {
library(echodata)
data("Nalls2019_merged")
LRRK2 <- subset(Nalls2019_merged, Locus=="LRRK2")
LRRK2 <- echodata::assign_lead_snp(LRRK2)
usethis::use_data(LRRK2, overwrite = TRUE)
}