Merge all cell-type-specific epigenomics

Merges multiple cell-type-specific epigenomic datasets (Nott 2019, Corces 2020) into a single GRanges object.

merge_celltype_specific_epigenomics(
  keep_extra_cols = FALSE,
  save_path = file.path(tools::R_user_dir(package = "echoannot", which = "cache"),
    "merge_celltype_specific_epigenomics.rds"),
  force_new = FALSE,
  verbose = TRUE
)

Arguments

keep_extra_cols

Keep extra columns that are not shared across all annotations.

save_path

Path to save merged results to.

force_new

If cached merged results already exist, ignore them and recreate the file anyway.

verbose

Print messages.

Examples

if (FALSE) { # \dontrun{
gr.merged <- echoannot::merge_celltype_specific_epigenomics()
} # }