Summarize motifbreakR + echolocatoR results

Source: R/MOTIFBREAKR_summarize.R

Summarize motifbreakR + echolocatoR results after they have been merged together with MOTIFBREAKR_filter.

MOTIFBREAKR_summarize(mb_merge)

Arguments

mb_merge

Output of MOTIFBREAKR_filter.

Value

Per-locus summary in data.frame format.

See also

Other motifbreakR: MOTIFBREAKR(), MOTIFBREAKR_filter_by_metadata()

Examples

if (FALSE) { # \dontrun{
merged_DT <- echodata::get_Nalls2019_merged()
mb_res <- MOTIFBREAKR(rsid_list = c("rs11175620"),
                      # limit the number of datasets tests 
                      # for demonstration purposes only
                      pwmList_max = 4,
                      calculate_pvals = FALSE)
mb_merge <- MOTIFBREAKR_filter(mb_res = mb_res,
                               merged_DT = merged_DT,
                               pvalue_threshold = NULL)
summary_ls <- MOTIFBREAKR_summarize(mb_merge = mb_merge)                         
} # }