Construct tabix path

Given some summary stats file, construct a name for the resulting sorted, bgzip-compressed tabix file.

Usage

construct_tabix_path(target_path, study_dir = NULL)

Arguments

target_path

Path to full GWAS/QTL summary statistics file.

study_dir

[optional] Path to study-specific subfolder.

See also

Other tabix functions: construct_vcf_path(), convert(), index, query_table(), query_vcf(), read_bgz(), run_bgzip()

Examples

bgz_file <- echotabix::construct_tabix_path(
    target_path = "mysumstatsfile.vcf.tsv.gz")