Convert summary stats file to tabix format

Convert summary stats file to tabix format

convert(
  fullSS_path,
  chrom_col = "CHR",
  start_col = "POS",
  end_col = start_col,
  verbose = TRUE
)

Arguments

fullSS_path

Path to full GWAS/QTL summary statistics file.

chrom_col

column for chromosome

start_col

column for start position

end_col

column for end position (is the same as start for snps)

verbose

Print messages.

See also

Other tabix: convert_and_query()

Examples

if (FALSE) {
fullSS_path <- echodata::example_fullSS()
fullSS_tabix <- convert(fullSS_path = fullSS_path, position_col = "BP")
}