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Import Command Line Interface tool

Source: R/import_cli.R
import_cli.Rd

Import a Command Line Interface (CLI) tool into R as a function.

Usage

import_cli(path, fix_names = TRUE, conda_env = NULL, verbose = TRUE)

Source

Stack Overflow

Function factories

Dynamic roxygen notes

match.call

Arguments

path

Path to CLI tool executable file (preferred), or simply the tool name.

fix_names

Map argument names to R-friendly versions.

conda_env

Conda environments to search in. If NULL (default), will search all conda environments.

verbose

Print messages.

Examples

if (FALSE) { # \dontrun{
mycurl <- import_cli(path="curl")
mycurl(h = TRUE)
mycurl(url= file.path("http://hgdownload.soe.ucsc.edu/goldenPath",
                           "hg38/multiz100way/md5sum.txt"),
       o="~/Downloads/tmp.txt")
} # }