Changelog

Source: NEWS.md

echoconda 1.0.0

Bug fixes

• Update basilisk.utils API calls for current Bioconductor release.
• Fix install_conda_reticulate passing "auto" as a literal path instead of resolving it.
• Fix basilisk env creation: use full version pins, pin python>=3.11.
• Remove tracked .DS_Store files.

echoconda 0.99.12

Bug fixes

• Local R CMD check fixes and compatibility updates.

echoconda 0.99.11

New features

• Standardize rworkflows.yml with canonical template: enable Docker on ghcr.io, set write-all permissions. Preserve python: 3.11 in matrix config.
• Remove tracked .DS_Store files.

echoconda 0.99.10

New features

• Updated rworkflows.

echoconda 0.99.9

New features

• Implemented rworkflows.
• Added set_rhome functions.

echoconda 0.99.8

Bug fixes

• yaml_to_env:
  • search_yamls returns yaml path,
  • Check that env exists earlier.
• Add echodata to Imports.
• Fix GHA: @master –> @v2
  
• Add R packages back into “echoR_mini” for PolyFun.

echoconda 0.99.7

New features

• Add and export new functions:
  • get_os
  • find_executables_remote

Bug fixes

• set_permissions: Remove and use echodata implementation instead (to avoid namespace conflicts).
• find_executables_remote: Avoid printing when verbose=FALSE.

echoconda 0.99.6

New features

• New functions:
  • remove_env
  • create_env
  • find_conda
  • list_envs
• find_packages:
  • Benchmarked multiple methods for speed and completeness of recovering excecutable paths.
• Setup basilisk
• echoR_mini:
  • Bare minimum conda env that solves in 2.5min.
  • Replaces echoR as the default.
• Install conda via basilisk by default.

Bug fixes

• Fix GHA pkgdown building:
  • The newest version of git introduced bugs when building pkgdown sites from within Docker containers (e.g. via my Linux GHA workflow). Adjusting GHA to fix this.
• Add R.utils to Imports.

echoconda 0.99.5

New features

• New functions:
  • cmd_print
  • set_permissions
• New conda env yaml:
  • epiprocess.yml

echoconda 0.99.4

New features

• Update GitHub Actions.
• find_packages: New function to search for packages across all conda envs.
• env_to_yaml: New function to export yaml file.
• yaml_to_env: New function to create env from yaml file.
• list_yamls: New function to list available yaml files shipped with echoconda.
• Add minimal test.yml and test_bad.yml files.

Bug fixes

• Try to allow switching between envs again.
• Omit setting env vars in zzz.R.
• Provide echoR_windows.yaml that omits conda packages not available on Windows OS.

echoconda 0.99.0

• Added a NEWS.md file to track changes to the package.