Get MAF using snpStats package

Source: R/snpstats_get_MAF.R

Get MAF using snpStats package

snpstats_get_MAF(dat, ss, force_new_MAF = FALSE, verbose = TRUE)

Arguments

LD_folder

Locus-specific LD output folder.

Source

snpStats Bioconductor page

See also

Other LD: LD_1KG_download_vcf(), LD_1KG(), LD_custom(), LD_ukbiobank(), compute_LD(), filter_LD(), get_locus_vcf_folder(), ldlinkr_ldproxy_batch(), load_or_create(), plot_LD(), popDat_1KGphase1, popDat_1KGphase3, rds_to_npz(), saveSparse(), save_LD_matrix(), translate_population()