eQTL Catalogue dataset metadata — meta • catalogueR

List of all queryable tabix-indexed eQTL Catalogue datasets and their associated systems/tissues/cell types.

meta

Format

An object of class data.table (inherits from data.frame) with 242 rows and 11 columns.

See also

Other eQTL Catalogue: BST1__Alasoo_2018.macrophage_IFNg, LRRK2__Alasoo_2018.macrophage_IFNg, MEX3C__Alasoo_2018.macrophage_IFNg, eQTL_Catalogue.fetch(), eQTL_Catalogue.header, eQTL_Catalogue.iterate_fetch(), eQTL_Catalogue.query(), eQTL_Catalogue.search_metadata(), fetch_restAPI(), fetch_tabix(), merge_gwas_qtl()

Examples

if (FALSE) {
meta <- eQTL_Catalogue.list_datasets(force_new=T)
meta <- meta %>% dplyr::mutate(ftp_path= gsub("Fairfax_2014_monocyte","Fairfax_2014",ftp_path)) 
usethis::use_data(meta, overwrite=T)
}