Find Consensus SNPs in echolocatoR output

Source: R/utils.R

Find Consensus SNPs in echolocatoR output

find_consensus_SNPs(
  finemap_dat,
  verbose = T,
  credset_thresh = 0.95,
  consensus_thresh = 2,
  sort_by_support = T,
  exclude_methods = NULL
)

Examples

data("BST1")
BST1 <- find_consensus_SNPs(finemap_dat=BST1)

#> [1] "+ Identifying Consensus SNPs..."
#> [1] "++ support_thresh = 2"
#> [1] "+ Calculating mean Posterior Probability (mean.PP)..."
#> [1] "++ 4 fine-mapping methods used."
#> [1] "++ 7 Credible Set SNPs identified."
#> [1] "++ 3 Consensus SNPs identified."