Paths to example eQTL Catalogue query results

Returns the paths to eQTL Catalogue query results stored within catalogueR. Each file is a merged data.table of the GWAS summary stats used to make the query, and the eQTL Catalogue query results (which can contain data for multiple eGenes).

example_eQTL_Catalogue_query_paths(Rlib_path = NULL)

Arguments

Rlib_path	This function will automatically find your Rlib path, but you can override this by supplying it manually.

Source

https://www.biorxiv.org/content/10.1101/388165v3

Details

GWAS data originally comes from the Parkinson's disease GWAS by Nalls et al. (bioRxiv).

SNP

SNP RSID

CHR

Chromosome

POS

Genomic positiion (in basepairs)

...

See also

Other Nalls23andMe_2019 These example files can be used: example_sumstats_paths()

Examples

gwas.qtl_paths <- example_eQTL_Catalogue_query_paths()