This is the page for the ROSMAP cohort:
RNA-seq Data:
RNA Prep Kit - KAPA Stranded RNA-Seq Kit with RiboErase (kapabiosystems), Chemagic RNA tissue kit (Perkin Elmer) with RiboGold (Illumina), dUTP method [REF1 - Levin et al., Nature Methods 2010] with poly-A selection [REF2 - Adiconis et al., Nature Methods 2013]
Sequencer -
Strandedness - unstranded
Single vs. Paired End - Paired End
Trim Adapter -
Total vs. Poly-A RNA - see table below
Read Length - see table below
Genotype Data
WGS vs. Array - WGS
RNA-seq brain region breakdown:
| Tissue | Count | Poly-A vs. Total RNA | Read Length |
|---|---|---|---|
| DLPFC | 818 | Poly-A | 101 bp |
| Head of Caudate Nucleus | 634 | Total | 100 bp |
| Posterior Cingulate Cortex | 494 | Total | 100 bp |