vignettes/echotabix.Rmd
echotabix.Rmd
utils::sessionInfo()## R Under development (unstable) (2022-03-10 r81874)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 20.04.4 LTS
##
## Matrix products: default
## BLAS/LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.8.so
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] echotabix_0.99.3 BiocStyle_2.23.1
##
## loaded via a namespace (and not attached):
## [1] bitops_1.0-7 matrixStats_0.61.0
## [3] fs_1.5.2 bit64_4.0.5
## [5] filelock_1.0.2 progress_1.2.2
## [7] httr_1.4.2 rprojroot_2.0.2
## [9] GenomeInfoDb_1.31.5 tools_4.2.0
## [11] bslib_0.3.1 utf8_1.2.2
## [13] R6_2.5.1 DBI_1.1.2
## [15] BiocGenerics_0.41.2 tidyselect_1.1.2
## [17] prettyunits_1.1.1 bit_4.0.4
## [19] curl_4.3.2 compiler_4.2.0
## [21] textshaping_0.3.6 cli_3.2.0
## [23] Biobase_2.55.0 xml2_1.3.3
## [25] desc_1.4.1 DelayedArray_0.21.2
## [27] rtracklayer_1.55.3 bookdown_0.25
## [29] sass_0.4.0 rappdirs_0.3.3
## [31] pkgdown_2.0.2.9000 systemfonts_1.0.4
## [33] stringr_1.4.0 digest_0.6.29
## [35] Rsamtools_2.11.0 rmarkdown_2.13
## [37] R.utils_2.11.0 XVector_0.35.0
## [39] pkgconfig_2.0.3 htmltools_0.5.2
## [41] MatrixGenerics_1.7.0 BSgenome_1.63.4
## [43] dbplyr_2.1.1 fastmap_1.1.0
## [45] rlang_1.0.2 RSQLite_2.2.10
## [47] BiocIO_1.5.0 jquerylib_0.1.4
## [49] generics_0.1.2 jsonlite_1.8.0
## [51] BiocParallel_1.29.17 dplyr_1.0.8
## [53] R.oo_1.24.0 VariantAnnotation_1.41.3
## [55] RCurl_1.98-1.6 magrittr_2.0.2
## [57] GenomeInfoDbData_1.2.7 Matrix_1.4-0
## [59] Rcpp_1.0.8.2 S4Vectors_0.33.11
## [61] fansi_1.0.2 lifecycle_1.0.1
## [63] R.methodsS3_1.8.1 stringi_1.7.6
## [65] yaml_2.3.5 SummarizedExperiment_1.25.3
## [67] zlibbioc_1.41.0 BiocFileCache_2.3.4
## [69] grid_4.2.0 blob_1.2.2
## [71] parallel_4.2.0 crayon_1.5.0
## [73] lattice_0.20-45 Biostrings_2.63.1
## [75] GenomicFeatures_1.47.12 hms_1.1.1
## [77] KEGGREST_1.35.0 seqminer_8.4
## [79] knitr_1.37 pillar_1.7.0
## [81] GenomicRanges_1.47.6 rjson_0.2.21
## [83] biomaRt_2.51.3 stats4_4.2.0
## [85] XML_3.99-0.9 glue_1.6.2
## [87] evaluate_0.15 data.table_1.14.2
## [89] BiocManager_1.30.16 png_0.1-7
## [91] vctrs_0.3.8 purrr_0.3.4
## [93] assertthat_0.2.1 cachem_1.0.6
## [95] xfun_0.30 restfulr_0.0.13
## [97] ragg_1.2.2 tibble_3.1.6
## [99] GenomicAlignments_1.31.2 AnnotationDbi_1.57.1
## [101] memoise_2.0.1 IRanges_2.29.1
## [103] ellipsis_0.3.2