echolocatoR output example: BST1 locus

Source: R/data.R

An example results file after running finemap_loci on the BST1 locus.

data("BST1")

Format

data.table

SNP

SNP RSID

CHR

Chromosome

POS

Genomic position (in basepairs)

...

Optional: extra columns

Nalls2019

data.table

Source

root_dir <- "~/Desktop/Fine_Mapping/Data/GWAS/Nalls23andMe_2019/BST1/Multi-finemap" BST1 <- data.table::fread(file.path(root_dir, "Multi-finemap_results.txt")) BST1 <- update_cols(dat = BST1) BST1 <- find_consensus_SNPs(dat = BST1) usethis::use_data(BST1, overwrite = TRUE)

Details

Data originally comes from the Parkinson's disease GWAS by Nalls et al., (bioRxiv).